PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_37841.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family SBP
Protein Properties Length: 268aa    MW: 29514.8 Da    PI: 6.8621
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_37841.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP68.41.4e-212394178
                  EE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
           SBP 41 rfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
                  rfCqqCsrfh l+efDe+krsCr+rL++hn+rrrk+q+
  MLOC_37841.2  2 RFCQQCSRFHLLTEFDEAKRSCRKRLDGHNRRRRKPQP 39
                  9**********************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031105.5E-14136IPR004333Transcription factor, SBP-box
PROSITE profilePS5114119.392137IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.108.2E-11124IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.06E-19242IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MRFCQQCSRF HLLTEFDEAK RSCRKRLDGH NRRRRKPQPD PMNSASFMTS QQGTRFPSFP  60
TPRPEQNWPG IIKTEENPYY THQLPLGISN RHHFGGSTST FAKEGRRFPF LQEGEINFAT  120
GVALEPAVCQ PLLKTVAPPE SSSSSSKMFS DGLTPVLDSD CALSLLSAPA NSSGIDVGQM  180
VQQTEHIPIA QPLFSNLQQF SSSSWFSRTQ ASTGTVSATG FSCPVVENEQ LNNVLTSDNN  240
DLNYNGIFHV GGEGSSDGAP PSLPFPWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-132365084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11936KRSCRKRLDGHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3745980.0AK374598.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3070D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574825.11e-161PREDICTED: squamosa promoter-binding-like protein 16
SwissprotQ6YZE81e-118SPL16_ORYSJ; Squamosa promoter-binding-like protein 16
TrEMBLF2EEM20.0F2EEM2_HORVD; Predicted protein
TrEMBLM0VW880.0M0VW88_HORVD; Uncharacterized protein
STRINGMLOC_37841.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-21SBP family protein